Rename contig to reference #2100
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Test FAILed. Build result: FAILUREGitHub pull request #2100 of commit a371f9f automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2100/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains e17890d # timeout=10Checking out Revision e17890d (origin/pr/2100/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f e17890d5101969801340d3d1e3c17dc947407ef1First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.11,2.2.2,ubuntuADAM-prb ? 2.7.5,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
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Test FAILed. Build result: FAILUREGitHub pull request #2100 of commit 47781cf automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2100/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 756ef68 # timeout=10Checking out Revision 756ef68 (origin/pr/2100/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 756ef687736c19f36bd745ec2be5c839dc2e07ddFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.11,2.2.2,ubuntuADAM-prb ? 2.7.5,2.11,2.2.2,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
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Test PASSed. |
heuermh
force-pushed
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Test PASSed. |
heuermh
force-pushed
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contig-to-reference
branch
from
6eaf6e5
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48f7fca
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Test PASSed. |
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This pull request has been out for a month, will merge soon without objection. |
fnothaft
approved these changes
Jan 11, 2019
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Merged! Thanks @heuermh! |
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Thank you, @fnothaft |
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Companion pull request to
bigdatagenomics/bdg-formats#43
bigdatagenomics/bdg-formats#154
Some temporary workarounds were necessary for
NucleotideContigFragment, which will be removed inbigdatagenomics/bdg-formats#142
bigdatagenomics/bdg-formats#153
If not clear, this bumps bdg-formats to a SNAPSHOT version,
0.12.0-SNAPSHOT.