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[ADAM-861] use -d to check for repo assembly dir, fixes #861 #862

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merged 1 commit into from Oct 10, 2015

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heuermh commented Oct 9, 2015

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/994/

Build result: FAILURE

[...truncated 16 lines...]First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.2.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.3.1,centosTriggering ADAM-prb ? 1.0.4,2.10,1.2.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.3.1,centosTriggering ADAM-prb ? 2.3.0,2.10,1.2.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.3.1,centosTriggering ADAM-prb ? 1.0.4,2.11,1.2.1,centosTriggering ADAM-prb ? 2.3.0,2.10,1.3.1,centosTriggering ADAM-prb ? 2.3.0,2.10,1.4.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.4.1,centosADAM-prb ? 2.3.0,2.11,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.3.1,centos completed with result SUCCESSADAM-prb ? 1.0.4,2.10,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,1.3.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.3.1,centos completed with result SUCCESSADAM-prb ? 1.0.4,2.11,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,1.3.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,1.4.1,centos completed with result FAILUREADAM-prb ? 2.3.0,2.11,1.4.1,centos completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

AmplabJenkins commented Oct 9, 2015

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/994/

Build result: FAILURE

[...truncated 16 lines...]First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.11,1.4.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.4.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.2.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.3.1,centosTriggering ADAM-prb ? 1.0.4,2.10,1.2.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.3.1,centosTriggering ADAM-prb ? 2.3.0,2.10,1.2.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.3.1,centosTriggering ADAM-prb ? 1.0.4,2.11,1.2.1,centosTriggering ADAM-prb ? 2.3.0,2.10,1.3.1,centosTriggering ADAM-prb ? 2.3.0,2.10,1.4.1,centosTriggering ADAM-prb ? 2.3.0,2.11,1.4.1,centosADAM-prb ? 2.3.0,2.11,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.3.1,centos completed with result SUCCESSADAM-prb ? 1.0.4,2.10,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,1.3.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.3.1,centos completed with result SUCCESSADAM-prb ? 1.0.4,2.11,1.2.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,1.3.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,1.4.1,centos completed with result FAILUREADAM-prb ? 2.3.0,2.11,1.4.1,centos completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Why would a bash script change fail a unit test only on one configuration? That is odd.

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heuermh commented Oct 9, 2015

Why would a bash script change fail a unit test only on one configuration? That is odd.

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Jenkins, retest this please.

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heuermh commented Oct 9, 2015

Jenkins, retest this please.

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- checking realigned reads for artificial input *** FAILED ***
  akka.ConfigurationException: Could not start logger due to [akka.ConfigurationException: Logger specified in config can't be loaded [akka.event.slf4j.Slf4jLogger] due to [akka.event.Logging$LoggerInitializationException: Logger log1-Slf4jLogger did not respond with LoggerInitialized, sent instead [TIMEOUT]]]
  at akka.event.LoggingBus$class.startDefaultLoggers(Logging.scala:142)
  at akka.event.EventStream.startDefaultLoggers(EventStream.scala:26)
  at akka.actor.LocalActorRefProvider.init(ActorRefProvider.scala:622)
  at akka.remote.RemoteActorRefProvider.init(RemoteActorRefProvider.scala:157)
  at akka.actor.ActorSystemImpl.liftedTree2$1(ActorSystem.scala:618)
  at akka.actor.ActorSystemImpl._start$lzycompute(ActorSystem.scala:615)
  at akka.actor.ActorSystemImpl._start(ActorSystem.scala:615)
  at akka.actor.ActorSystemImpl.start(ActorSystem.scala:632)
  at akka.actor.ActorSystem$.apply(ActorSystem.scala:141)
  at akka.actor.ActorSystem$.apply(ActorSystem.scala:118)
  ...

https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/994/HADOOP_VERSION=2.3.0,SCALAVER=2.10,SPARK_VERSION=1.4.1,label=centos/console

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ryan-williams commented Oct 9, 2015

- checking realigned reads for artificial input *** FAILED ***
  akka.ConfigurationException: Could not start logger due to [akka.ConfigurationException: Logger specified in config can't be loaded [akka.event.slf4j.Slf4jLogger] due to [akka.event.Logging$LoggerInitializationException: Logger log1-Slf4jLogger did not respond with LoggerInitialized, sent instead [TIMEOUT]]]
  at akka.event.LoggingBus$class.startDefaultLoggers(Logging.scala:142)
  at akka.event.EventStream.startDefaultLoggers(EventStream.scala:26)
  at akka.actor.LocalActorRefProvider.init(ActorRefProvider.scala:622)
  at akka.remote.RemoteActorRefProvider.init(RemoteActorRefProvider.scala:157)
  at akka.actor.ActorSystemImpl.liftedTree2$1(ActorSystem.scala:618)
  at akka.actor.ActorSystemImpl._start$lzycompute(ActorSystem.scala:615)
  at akka.actor.ActorSystemImpl._start(ActorSystem.scala:615)
  at akka.actor.ActorSystemImpl.start(ActorSystem.scala:632)
  at akka.actor.ActorSystem$.apply(ActorSystem.scala:141)
  at akka.actor.ActorSystem$.apply(ActorSystem.scala:118)
  ...

https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/994/HADOOP_VERSION=2.3.0,SCALAVER=2.10,SPARK_VERSION=1.4.1,label=centos/console

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Yea seems bogus, and not in a way I've seen before

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ryan-williams commented Oct 9, 2015

Yea seems bogus, and not in a way I've seen before

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@ryan-williams Right, I saw that, a timeout initializing a logger. What is it trying to do something remotely?

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heuermh commented Oct 9, 2015

@ryan-williams Right, I saw that, a timeout initializing a logger. What is it trying to do something remotely?

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no clue, was trying to just paste the error here but you'd already checked it :) jenkins is so flaky these days

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ryan-williams commented Oct 9, 2015

no clue, was trying to just paste the error here but you'd already checked it :) jenkins is so flaky these days

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/995/
Test PASSed.

AmplabJenkins commented Oct 9, 2015

Test PASSed.
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https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/995/
Test PASSed.

@fnothaft fnothaft merged commit 2c0bd31 into bigdatagenomics:master Oct 10, 2015

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Thanks @heuermh!

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fnothaft commented Oct 10, 2015

Thanks @heuermh!

@heuermh heuermh deleted the heuermh:repo-assembly-dir branch Jun 28, 2016

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