revert --format change

bigdatagenomics · Oct 26, 2020 · 1dfdfc1 · 1dfdfc1
1 parent 867eda6
commit 1dfdfc1
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Vep.scala b/core/src/main/scala/org/bdgenomics/cannoli/Vep.scala
@@ -84,6 +84,8 @@ class Vep(
 
     val builder = CommandBuilders.create(args.useDocker, args.useSingularity)
       .setExecutable(args.executable)
+      .add("--format")
+      .add("vcf")
       .add("--output_file")
       .add("STDOUT")
       .add("--vcf")