Update samtools container image to 1.19--h50ea8bc_0.

bigdatagenomics · Dec 14, 2023 · 87a5a2b · 87a5a2b
1 parent 186a3cc
commit 87a5a2b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala b/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala
@@ -36,8 +36,8 @@ class SamtoolsMpileupArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the samtools executable. Defaults to samtools.")
   var executable: String = "samtools"
 
-  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.16.1--h6899075_1.")
-  var image: String = "quay.io/biocontainers/samtools:1.16.1--h6899075_1"
+  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.19--h50ea8bc_0.")
+  var image: String = "quay.io/biocontainers/samtools:1.19--h50ea8bc_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false