Update docker image tags.

bigdatagenomics · Dec 17, 2019 · f6524fe · f6524fe
1 parent a677fd9
commit f6524fe
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Showing 5 changed files with 10 additions and 10 deletions.
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala
@@ -35,8 +35,8 @@ class BcftoolsCallArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
   var executable: String = "bcftools"
 
-  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.9--h68d8f2e_8.")
-  var image: String = "quay.io/biocontainers/bcftools:1.9--h68d8f2e_8"
+  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.10.1--hd2cd319_0.")
+  var image: String = "quay.io/biocontainers/bcftools:1.10.1--hd2cd319_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false

diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala
@@ -36,8 +36,8 @@ class BcftoolsMpileupArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
   var executable: String = "bcftools"
 
-  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.9--h68d8f2e_8.")
-  var image: String = "quay.io/biocontainers/bcftools:1.9--h68d8f2e_8"
+  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.10.1--hd2cd319_0.")
+  var image: String = "quay.io/biocontainers/bcftools:1.10.1--hd2cd319_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false

diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala
@@ -39,8 +39,8 @@ class BcftoolsNormArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
   var executable: String = "bcftools"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.9--h68d8f2e_8.")
-  var image: String = "quay.io/biocontainers/bcftools:1.9--h68d8f2e_8"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.10.1--hd2cd319_0.")
+  var image: String = "quay.io/biocontainers/bcftools:1.10.1--hd2cd319_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false

diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala b/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala
@@ -47,8 +47,8 @@ class BedtoolsIntersectArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Bedtools executable. Defaults to bedtools.")
   var executable: String = "bedtools"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bedtools:2.29.0--hc088bd4_3.")
-  var image: String = "quay.io/biocontainers/bedtools:2.29.0--hc088bd4_3"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bedtools:2.29.1--hc088bd4_1.")
+  var image: String = "quay.io/biocontainers/bedtools:2.29.1--hc088bd4_1"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false

diff --git a/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala b/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala
@@ -36,8 +36,8 @@ class SamtoolsMpileupArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the samtools executable. Defaults to samtools.")
   var executable: String = "samtools"
 
-  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.9--h10a08f8_12.")
-  var image: String = "quay.io/biocontainers/samtools:1.9--h10a08f8_12"
+  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.10--h9402c20_1.")
+  var image: String = "quay.io/biocontainers/samtools:1.10--h9402c20_1"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false