updated jenkins tests and reqs to show errors

mango-python/Makefile

@@ -124,9 +124,8 @@ check_build_reqs:
 
 
 prepare:
-	$(pip) install pytest==3.9.1
+	which $(pip)
 	# ipython version required for python 2.7
-	$(pip) install jupyter_contrib_nbextensions
 	$(pip) install -r requirements.txt
 
 

mango-python/requirements.txt

@@ -6,3 +6,5 @@ bdgenomics.adam==0.30.0
 bdgenomics.mango.pileup==0.0.6a0
 ipywidgets==7.0.0
 psutil
+pytest==3.9.1
+jupyter_contrib_nbextensions

scripts/jenkins-test

@@ -220,11 +220,42 @@ do
     source activate mango-build-${PYTHON_UUID}
     set -x -v
 
+    # install npm and node in the venv for mango-pileup
+    conda install -y nodejs
+
     which python
     python -h
 
-    # install npm and node in the venv for mango-pileup
-    conda install -y nodejs
+    pip install cigar==0.1.3
+    python -h
+
+    pip install matplotlib==2.0.2
+    python -h
+
+    pip install ipython==7.8.0
+    python -h
+
+    pip install jupyter==1.0.0
+    python -h
+
+    pip install bdgenomics.adam==0.30.0
+    python -h
+
+    pip install bdgenomics.mango.pileup==0.0.6a0
+    python -h
+
+    pip install ipywidgets==7.0.0
+
+    python -h
+    pip install psutil
+    python -h
+
+    pip install pytest==3.9.1
+    python -h
+
+    pip install jupyter_contrib_nbextensions
+
+    python -h
 
     # prepare mango python
     pushd mango-python