DESCRIPTION

Package: BOBaFIT
Type: Package
Title: Refitting diploid region profiles using a clustering procedure
Version: 1.11.0
Authors@R: c(person("Andrea", "Poletti", email="andrea.poletti5@gmail.com", 
      role=c("aut")),
      person("Gaia", "Mazzocchetti", email="bioinformatic.seragnoli@gmail.com", 
      role=c("aut", "cre")),
      person("Vincenza", "Solli", email="vincenza.solli2@unibo.it", 
      role=c("aut")))
Description: This package provides a method to refit and correct the diploid
 region in copy number profiles. It uses a clustering algorithm to identify
 pathology-specific normal (diploid) chromosomes and then use their copy number
 signal to refit the whole profile.  The package is composed by three functions:
 DRrefit (the main function), ComputeNormalChromosome and PlotCluster.  
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
URL: https://github.com/andrea-poletti-unibo/BOBaFIT
BugReports: https://github.com/andrea-poletti-unibo/BOBaFIT/issues
Imports: 
    dplyr,
    NbClust,
    ggplot2,
    ggbio,
    grDevices,
    stats,
    tidyr,
    GenomicRanges,
    ggforce,
    stringr,
    plyranges,
    methods,
    utils,
    magrittr
Suggests: 
    rmarkdown,
    markdown,
    BiocStyle,
    knitr,
    testthat (>= 3.0.0),
    utils,
    testthat
Config/testthat/edition: 3
biocViews: CopyNumberVariation, Clustering, Visualization, Normalization, 
    Software
Depends: 
    R (>= 2.10)
VignetteBuilder: knitr