DESCRIPTION

Package: CBEA
Title: Competitive Balances for Taxonomic Enrichment Analysis in R
Version: 1.7.0
Date: 2022-03-03
Authors@R: 
    person("Quang", "Nguyen", , "quangpmnguyen@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2072-3279"))
Description: This package implements CBEA, a method to perform set-based
    analysis for microbiome relative abundance data. This approach
    constructs a competitive balance between taxa within the set and
    remainder taxa per sample. More details can be found in the Nguyen et
    al. 2021+ manuscript. Additionally, this package adds support
    functions to help users perform taxa-set enrichment analyses using
    existing gene set analysis methods.  In the future we hope to also
    provide curated knowledge driven taxa sets.
License: MIT + file LICENSE
URL: https://github.com/qpmnguyen/CBEA,
    https://qpmnguyen.github.io/CBEA/
BugReports: https://github.com/qpmnguyen/CBEA//issues
Depends: 
    R (>= 4.2.0)
Imports: 
    BiocParallel,
    BiocSet,
    dplyr,
    lmom,
    fitdistrplus,
    magrittr,
    methods,
    mixtools,
    Rcpp (>= 1.0.7),
    stats,
    SummarizedExperiment,
    tibble,
    TreeSummarizedExperiment,
    tidyr,
    glue,
    generics,
    rlang,
    goftest
Suggests: 
    phyloseq,
    BiocStyle,
    covr,
    knitr,
    RefManageR,
    rmarkdown,
    sessioninfo,
    testthat (>= 3.0.0),
    tidyverse,
    roxygen2,
    mia,
    purrr
LinkingTo: 
    Rcpp
VignetteBuilder: 
    knitr
biocViews: Software, Microbiome, Metagenomics, GeneSetEnrichment, DataImport
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2