DESCRIPTION

Package: GeDi
Title: Defining and visualizing the distances between different genesets
Version: 1.3.0
Date: 2024-10-10
Authors@R: 
    c(
        person(
            given = "Annekathrin", family = "Nedwed", role = c("aut", "cre"),
            email = "anneludt@uni-mainz.de", comment = c(ORCID = "0000-0002-2475-4945")),
        person(
            given = "Federico", family = "Marini", role = c("aut"), 
            email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
        )
    )
Description: The package provides different distances measurements 
    to calculate the difference between genesets. Based on these scores
    the genesets are clustered and visualized as graph. This is all
    presented in an interactive Shiny application for easy usage.
Depends:
    R (>= 4.4.0)
Imports: 
    GOSemSim,
    Matrix,
    shiny,
    shinyWidgets,
    bs4Dash,
    rintrojs,
    utils,
    DT,
    dplyr,
    shinyBS,
    STRINGdb,
    igraph,
    visNetwork,
    shinycssloaders,
    fontawesome,
    grDevices,
    parallel,
    stats,
    ggplot2,
    plotly,
    GeneTonic,
    RColorBrewer,
    scales,
    readxl,
    ggdendro,
    ComplexHeatmap,
    BiocNeighbors,
    tm,
    wordcloud2,
    tools,
    BiocParallel,
    BiocFileCache,
    cluster,
    circlize
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    DESeq2,
    htmltools,
    pcaExplorer,
    AnnotationDbi,
    macrophage,
    topGO,
    biomaRt,
    ReactomePA,
    clusterProfiler,
    BiocStyle,
    org.Hs.eg.db
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/AnnekathrinSilvia/GeDi
BugReports: https://github.com/AnnekathrinSilvia/GeDi/issues
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
biocViews: 
    GUI, GeneSetEnrichment, Software, Transcription, RNASeq, 
    Visualization, Clustering, Pathways, ReportWriting, GO, KEGG, 
    Reactome, ShinyApps