DESCRIPTION

Package: demuxmix
Title: Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models
Version: 1.9.0
Date: 2024-01-29
Description: A package for demultiplexing single-cell sequencing experiments
    of pooled cells labeled with barcode oligonucleotides. The package
    implements methods to fit regression mixture models for a probabilistic
    classification of cells, including multiplet detection. Demultiplexing
    error rates can be estimated, and methods for quality control are provided.
Authors@R: person("Hans-Ulrich", "Klein",
    email = "hansulrich.klein@gmail.com",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0002-6382-9428"))
License: Artistic-2.0
Depends: R (>= 4.0.0)
Imports: stats, MASS, Matrix, ggplot2, gridExtra, methods
Suggests: BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: SingleCell, Sequencing, Preprocessing, Classification, Regression
BiocType: Software
URL: https://github.com/huklein/demuxmix
BugReports: https://github.com/huklein/demuxmix/issues
Encoding: UTF-8
RoxygenNote: 7.2.2
Config/testthat/edition: 3