DESCRIPTION

Package: methylPipe
Type: Package
Title: Base resolution DNA methylation data analysis
Version: 1.41.0
Date: 2022-03-15
Authors@R: c(person("Mattia", "Pelizzola", role = "aut"), person("Kamal", "Kishore", role = "aut"), person("Mattia", "Furlan", email = "mattia.furlan@iit.it", role = c("ctb","cre")))
Description: Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.
License: GPL(>=2)
LazyLoad: yes
Imports: marray, gplots, IRanges, BiocGenerics, Gviz, GenomicAlignments, Biostrings, parallel, data.table, GenomeInfoDb, S4Vectors
Depends: R (>= 3.2.0), methods, grDevices, graphics, stats, utils, GenomicRanges, SummarizedExperiment (>= 0.2.0), Rsamtools 
Suggests: BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR
VignetteBuilder: knitr
biocViews: MethylSeq, DNAMethylation, Coverage, Sequencing