DESCRIPTION

Package: simplifyEnrichment
Type: Package
Title: Simplify Functional Enrichment Results
Version: 2.1.0
Date: 2024-09-13
Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
                  comment = c('ORCID'="0000-0002-7395-8709"))
Depends: R (>= 4.0.0)
Imports: simona,
         ComplexHeatmap (>= 2.7.4),
         grid,
         circlize,
         GetoptLong,
         digest, 
         tm,
         GO.db,
         AnnotationDbi,
         slam,
         methods,
         clue,
         grDevices,
         stats,
         utils,
         cluster (>= 1.14.2),
         colorspace,
         GlobalOptions (>= 0.1.0)
Suggests: knitr,
          ggplot2,
          cowplot,
          mclust,
          apcluster,
          MCL,
          dbscan,
          igraph,
          gridExtra,
          dynamicTreeCut,
          testthat,
          gridGraphics,
          flexclust,
          BiocManager,
          InteractiveComplexHeatmap (>= 0.99.11),
          shiny,
          shinydashboard,
          cola,
          hu6800.db,
          rmarkdown,
          genefilter,
          gridtext,
          fpc
Description: A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms
         is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.
biocViews: Software, Visualization, GO, Clustering, GeneSetEnrichment
URL: https://github.com/jokergoo/simplifyEnrichment, https://simplifyEnrichment.github.io
VignetteBuilder: knitr
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1