Update SPAdes 3.12.0 #38819
Merged
Update SPAdes 3.12.0 #38819
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
@bioconda-bot please merge |
|
I will attempt to upload artifacts and merge this PR. This may take some time, please have patience. |
cokelaer
pushed a commit
to cokelaer/bioconda-recipes
that referenced
this pull request
Apr 28, 2023
Merge PR bioconda#38819, commits were: * Merge branch 'master' into update-spades-3.12.0 * pin python version below 3.10
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Using SPAdes 3.12.0 with a Python version >3.9 leads to the error described in this issue. Python versions 3.10 and above don't have the alias to the old collections class anymore (see this issue).
Setting the python version to below 3.10 fixes the problem for SPAdes 3.12.0 (it is anyways fixed in SPAdes >=3.15.4).