filter sequences for blooms #163
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| * Filter demultiplexed sequence data to only fecal samples | ||
| * Determine what sequences in the fecal samples recruit to the observed bloom sequences | ||
| * Remove the recruited bloom sequences from the demultiplexed sequence data | ||
| * Trim the filtered demultiplexed data (to reduce study bias when combining with short reads, such as the data in [Yatsunenko et al 2012](http://www.nature.com/nature/journal/v486/n7402/abs/nature11053.html)) |
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Should this be in a separate md? Note that this is not part of the bloom filtering ...
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Good catch, copy pasta. Trimming is done in the pick OTUs step
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I want pasta, it's almost lunch time ...
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this is actually done in this notebook at the end. i dont see the benefit in a notebook dedicated to trimming though...
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Yes, saw that. Perhaps adding to the main description. Note that it talks about the bloom filtering but not about the length.
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A few comments ... nothing major. |
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Thanks! On Wed, Oct 21, 2015 at 1:35 PM, Antonio Gonzalez notifications@github.com
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I don't see any immediate problems. Is this ready to merge? |
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If @antgonza gives a 👍 |
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thanks! On Wed, Oct 21, 2015 at 2:27 PM, Antonio Gonzalez notifications@github.com
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@ElDeveloper @antgonza @mortonjt @josenavas @squirrelo, round 2 is up.