Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Lme2 #38

Merged
merged 14 commits into from
Aug 18, 2016
Merged

Lme2 #38

merged 14 commits into from
Aug 18, 2016

Conversation

mortonjt
Copy link
Collaborator

Continued from #37. Something weird was happening with the git diffs.

mdf = smf.mixedlm(stats_formula, data=data,
groups=data[groups],
**kwargs).fit()
print(mdf.pvalues)
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Can you remove this line?

@coveralls
Copy link

Coverage Status

Coverage increased (+0.01%) to 99.606% when pulling af5f730 on mortonjt:lme2 into eb871ea on biocore:regression_results.

Now we can run the linear mixed effects model on the proportions.
Underneath the hood, the proportions will be transformed into balances,
so that the linear mixed effects models can be run directly on balances.
Since each patient was sampled repeatedly, we'll specify them separately
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

extra space between "was" and "sampled"

@coveralls
Copy link

Coverage Status

Coverage increased (+0.01%) to 99.606% when pulling a78b49f on mortonjt:lme2 into eb871ea on biocore:regression_results.

@wasade
Copy link
Member

wasade commented Aug 18, 2016

@mortonjt fyi, failure on travis

@coveralls
Copy link

Coverage Status

Coverage increased (+0.01%) to 99.606% when pulling 9922347 on mortonjt:lme2 into eb871ea on biocore:regression_results.

@ElDeveloper ElDeveloper merged commit 47f577f into biocore:regression_results Aug 18, 2016
@ElDeveloper
Copy link
Member

Thanks @mortonjt

@mortonjt mortonjt deleted the lme2 branch April 6, 2017 11:43
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

4 participants