Module 'scipy' has no attribute 'where'

[EOzcariz]

Dear all,

I was trying to run a MOFA model in python but I faced the following error during the training:

Module 'scipy' has no attribute 'where'

My data consists of two views with different amount of patients/view

Below is the code:

D = [len(df_blood_RNA_melted) + len(df_biopsy_RNA_melted),len(df_blood_EPICs_melted) + len(df_biopsy_EPICs_melted)]
M = len(D)
K = 5
N = [len(df[df["group"] == "Mild"]),len(df[df["group"] == "Moderate"]),len(df[df["group"] == "Severe"])]
G = len(N)

ent.set_data_df(df, likelihoods = ["gaussian","gaussian"])

ent.set_model_options(
factors = 10,
spikeslab_weights = True,
ard_weights = True,
ard_factors = True
)

ent.set_train_options(
convergence_mode = "fast",
dropR2 = 0.001,
gpu_mode = True,
seed = 123
)

ent.build()

ent.run()

Thanks a lot,
Enrique

[cyianor]

Addressed by PR #27 which has been waiting for merging since April.

[ashishpawar517]

Is there any workaround for this?

[VladimirShitov]

I am having a similar issue, which is also addressed in the mentioned PR. Are there any plans to merge it?

@ashishpawar517 , the workaround is to install MOFA from the fork that fixes the issue:
pip install git+https://github.com/cyianor/mofapy2@master --force-reinstall --no-deps

[cyianor]

@gtca seems to still push new changes sometimes. Care to comment if the script import issue will be fixed eventually?

[gtca]

Thanks for the ping, @cyianor!