Skip to content

MicroHapDB 0.9
Compare
Choose a tag to compare
@standage standage released this 03 Jul 20:01
· 25 commits to master since this release
0.9
5592dbb

Added

  • Italian population frequencies for 98 markers from Turchi et al 2019 (see #107).
  • 21 marker definitions and population frequences from Zou et al 2022 (see #109).
  • Check for overlapping microhaps from different sources during the database build (#112).
  • Over 1,000 marker definitions from four whole-genome screens from Yu et al 2022 (see #115, #118, #128).
  • New nomenclature module for parsing and validating microhap identifiers (see #119).
  • New summarize subcommand for summarizing MicroHapDB database contents (see #120).
  • 1,000 marker definitions from Zhu et al 2023 (see #125, #131).
  • New check during database build time to make sure that markers sharing the same name actually occupy the same locus (see #128).

Changed

  • Overhaul of the marker table structure and database build procedure (see #106, #111, #112).
  • Use Byrska-Bishop 2022 instead of Auton 2015 for main frequency and Ae calculations (see #106, #112, #114, #130).
  • Marker FASTA output now produces a single sequence per locus, even when multiple markers at a locus are defined (#124).
Assets 2