You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
after "offline" discussion:
in bioimageio validate we do not test if the specified files even exist. For simplicity we should keep it that way, which avoids any trouble running the validate command in pyodide, etc.
Therefore I will add the check for shape matching of test data and description to bioimageio test-model here in core.
We specify that
shape = shape(input_tensor) * scale + 2 * offset
for theImplicitOutputShape
, see https://github.com/bioimage-io/spec-bioimage-io/blob/gh-pages/model_spec_latest.md.However, it seems like this is not properly checked in
bioiamgeio test-model
:test-model
passes for https://github.com/bioimage-io/spec-bioimage-io/blob/main/example_specs/models/stardist_example_model/rdf.yaml#L39; however, the correct value would be 33 / 2.@FynnBe we should make sure that the ImplicitOutputShape (and also InputShape etc.) are validated for the test input / outputs.
Is
test-model
the best place to do this or can we do it even earlier in validation?The text was updated successfully, but these errors were encountered: