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bioio-tifffile and bioio-ome-tiff parse ome-tiff metadata differently #38
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Thank you for reporting this! In the same environment, could you run bioio.plugins.dump_plugins() and put the output here? |
This
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Describe the Bug
bioio-tifffile.Reader does not properly parse ome-tiff metadata, but bioio-ome-tiff does. There is not notice given to the user which reader is being used, and given bioio-tifffile being required for bioio-ome-tiff to work (see: bioio-devs/bioio-ome-tiff#11), results in bad default behavior where bioio-tifffile is being used as the default reader.
Expected Behavior
I would expect bioio_ome_tiff to be the preferred reader if the given files is an ome-tiff. I would also expect if it is not the default reader, that bioio-tifffile would parse the metadata correctly.
Reproduction
The same exact behavior is reproduced with
But is very different with the ome_tiff reader
returns:
Environment
The text was updated successfully, but these errors were encountered: