Update tests for extended phylip format

* Update expected output for test_AlignIO, test_SeqIO * Apply most of the same exceptions affecting the phylip format to extended phylip * Add a sample extended phylip format-file (primates.phyx, from the Bodega Phylogenetics Wiki: http://bodegaphylo.wikispot.org/RAxML_Tutorial)
biopython · Jun 18, 2011 · 4d5e57a · 4d5e57a
1 parent f4d2001
commit 4d5e57a
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diff --git a/Tests/ExtendedPhylip/primates.phyx b/Tests/ExtendedPhylip/primates.phyx
@@ -0,0 +1,234 @@
+ 12 898
+Tarsius_syrichta     AAGTTTCATT GGAGCCACCA CTCTTATAAT TGCCCATGGC CTCACCTCCT
+Lemur_catta          AAGCTTCATA GGAGCAACCA TTCTAATAAT CGCACATGGC CTTACATCAT
+Homo_sapiens         AAGCTTCACC GGCGCAGTCA TTCTCATAAT CGCCCACGGG CTTACATCCT
+Pan                  AAGCTTCACC GGCGCAATTA TCCTCATAAT CGCCCACGGA CTTACATCCT
+Gorilla              AAGCTTCACC GGCGCAGTTG TTCTTATAAT TGCCCACGGA CTTACATCAT
+Pongo                AAGCTTCACC GGCGCAACCA CCCTCATGAT TGCCCATGGA CTCACATCCT
+Hylobates            AAGCTTTACA GGTGCAACCG TCCTCATAAT CGCCCACGGA CTAACCTCTT
+Macaca_fuscus        AAGCTTTTCC GGCGCAACCA TCCTTATGAT CGCTCACGGA CTCACCTCTT
+Macaca_mulatta       AAGCTTTTCT GGCGCAACCA TCCTCATGAT TGCTCACGGA CTCACCTCTT
+Macaca_fascicularis  AAGCTTCTCC GGCGCAACCA CCCTTATAAT CGCCCACGGG CTCACCTCTT
+Macaca_sylvanus      AAGCTTCTCC GGTGCAACTA TCCTTATAGT TGCCCATGGA CTCACCTCTT
+Saimiri_sciureus     AAGCTTCACC GGCGCAATGA TCCTAATAAT CGCTCACGGG TTTACTTCGT
+
+                     CCCTATTATT TTGCCTAGCA AATACAAACT ACGAACGAGT CCACAGTCGA
+                     CCATATTATT CTGTCTAGCC AACTCTAACT ACGAACGAAT CCATAGCCGT
+                     CATTACTATT CTGCCTAGCA AACTCAAACT ACGAACGCAC TCACAGTCGC
+                     CATTATTATT CTGCCTAGCA AACTCAAATT ATGAACGCAC CCACAGTCGC
+                     CATTATTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC
+                     CCCTACTGTT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC
+                     CCCTGCTATT CTGCCTTGCA AACTCAAACT ACGAACGAAC TCACAGCCGC
+                     CCATATATTT CTGCCTAGCC AATTCAAACT ATGAACGCAC TCACAACCGT
+                     CCATATATTT CTGCCTAGCC AATTCAAACT ATGAACGCAC TCACAACCGT
+                     CCATGTATTT CTGCTTGGCC AATTCAAACT ATGAGCGCAC TCATAACCGT
+                     CCATATACTT CTGCTTGGCC AACTCAAACT ACGAACGCAC CCACAGCCGC
+                     CTATGCTATT CTGCCTAGCA AACTCAAATT ACGAACGAAT TCACAGCCGA
+
+                     ACAATAGCAC TAGCCCGTGG CCTTCAAACC CTATTACCTC TTGCAGCAAC
+                     ACAATACTAC TAGCACGAGG GATCCAAACC ATTCTCCCTC TTATAGCCAC
+                     ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCTTT
+                     ATCATAATTC TCTCCCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT
+                     ATCATAATTC TCTCTCAAGG ACTCCAAACC CTACTCCCAC TAATAGCCCT
+                     ATCATAATCC TCTCTCAAGG CCTTCAAACT CTACTCCCCC TAATAGCCCT
+                     ATCATAATCC TATCTCGAGG GCTCCAAGCC TTACTCCCAC TGATAGCCTT
+                     ACCATACTAC TGTCCCGAGG ACTTCAAATC CTACTTCCAC TAACAGCCTT
+                     ACCATACTAC TGTCCCGGGG ACTTCAAATC CTACTTCCAC TAACAGCTTT
+                     ACCATACTAC TATCCCGAGG ACTTCAAATT CTACTTCCAT TGACAGCCTT
+                     ATCATACTAC TATCCCGAGG ACTCCAAATC CTACTCCCAC TAACAGCCTT
+                     ACAATAACAT TTACTCGAGG GCTCCAAACA CTATTCCCGC TTATAGGCCT
+
+                     ATGATGACTC CTCGCCAGCT TAACCAACCT GGCCCTTCCC CCAACAATTA
+                     CTGATGACTA CTCGCCAGCC TAACTAACCT AGCCCTACCC ACCTCTATCA
+                     TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACTATTA
+                     TTGATGACTC CTAGCAAGCC TCGCTAACCT CGCCCTACCC CCTACCATTA
+                     TTGATGACTT CTGGCAAGCC TCGCCAACCT CGCCTTACCC CCCACCATTA
+                     CTGATGACTT CTAGCAAGCC TCACTAACCT TGCCCTACCA CCCACCATCA
+                     CTGATGACTC GCAGCAAGCC TCGCTAACCT CGCCCTACCC CCCACTATTA
+                     TTGATGATTA ACAGCAAGCC TTACTAACCT TGCCCTACCC CCCACTATCA
+                     CTGATGATTA ACAGCAAGCC TTACTAACCT TGCCCTACCC CCCACTATCA
+                     CTGATGACTC ACAGCAAGCC TTACTAACCT TGCCCTACCC CCCACTATTA
+                     CTGATGATTC ACAGCAAGCC TTACTAATCT TGCTCTACCC TCCACTATTA
+                     CTGATGACTC CTAGCAAATC TCGCTAACCT CGCCCTACCC ACAGCTATTA
+
+                     ATTTAATCGG TGAACTGTCC GTAATAATAG CAGCATTTTC ATGGTCACAC
+                     ATTTAATTGG CGAACTATTC GTCACTATAG CATCCTTCTC ATGATCAAAC
+                     ACCTACTGGG AGAACTCTCT GTGCTAGTAA CCACGTTCTC CTGATCAAAT
+                     ATCTCCTAGG GGAACTCTCC GTGCTAGTAA CCTCATTCTC CTGATCAAAT
+                     ACCTACTAGG AGAGCTCTCC GTACTAGTAA CCACATTCTC CTGATCAAAC
+                     ACCTTCTAGG AGAACTCTCC GTACTAATAG CCATATTCTC TTGATCTAAC
+                     ACCTCCTAGG TGAACTCTTC GTACTAATGG CCTCCTTCTC CTGGGCAAAC
+                     ATCTACTAGG TGAACTCTTT GTAATCGCAA CCTCATTCTC CTGATCCCAT
+                     ACCTACTAGG TGAACTCTTT GTAATCGCGA CCTCATTCTC CTGGTCCCAT
+                     ATCTACTAGG CGAACTCTTT GTAATCACAA CTTCATTTTC CTGATCCCAT
+                     ATCTACTGGG CGAACTCTTC GTAATCGCAA CCTCATTTTC CTGATCCCAC
+                     ATCTAGTAGG AGAATTACTC ACAATCGTAT CTTCCTTCTC TTGATCCAAC
+
+                     CTAACTATTA TCTTAGTAGG CCTTAACACC CTTATCACCG CCCTATATTC
+                     ATTACAATTA TCTTAATAGG CTTAAATATG CTCATCACCG CTCTCTATTC
+                     ATCACTCTCC TACTTACAGG ACTCAACATA CTAGTCACAG CCCTATACTC
+                     ACCACTCTCC TACTCACAGG ATTCAACATA CTAATCACAG CCCTGTACTC
+                     ACCACCCTTT TACTTACAGG ATCTAACATA CTAATTACAG CCCTGTACTC
+                     ATCACCATCC TACTAACAGG ACTCAACATA CTAATCACAA CCCTATACTC
+                     ACTACTATTA CACTCACCGG GCTCAACGTA CTAATCACGG CCCTATACTC
+                     ATCACCATTA TGCTAACAGG ACTTAACATA TTAATTACGG CCCTCTACTC
+                     ATCACCATTA TATTAACAGG ATTTAACATA CTAATTACGG CCCTCTACTC
+                     ATCACCATTG TGTTAACGGG CCTTAATATA CTAATCACAG CCCTCTACTC
+                     ATCACCATCA TACTAACAGG ACTGAACATA CTAATTACAG CCCTCTACTC
+                     TTTACTATTA TATTCACAGG ACTTAATATA CTAATTACAG CACTCTACTC
+
+                     CCTATATATA CTAATCATAA CTCAACGAGG AAAATACACA TATCATATCA
+                     CCTCTATATA TTAACTACTA CACAACGAGG AAAACTCACA TATCATTCGC
+                     CCTCTACATA TTTACCACAA CACAATGGGG CTCACTCACC CACCACATTA
+                     CCTCTACATG TTTACCACAA CACAATGAGG CTCACTCACC CACCACATTA
+                     CCTTTATATA TTTACCACAA CACAATGAGG CCCACTCACA CACCACATCA
+                     TCTCTATATA TTCACCACAA CACAACGAGG TACACCCACA CACCACATCA
+                     CCTTTACATA TTTATCATAA CACAACGAGG CACACTTACA CACCACATTA
+                     TCTCCACATA TTCACTACAA CACAACGAGG AACACTCACA CATCACATAA
+                     CCTCCACATA TTCACCACAA CACAACGAGG AGCACTCACA CATCACATAA
+                     TCTCCACATG TTCATTACAG TACAACGAGG AACACTCACA CACCACATAA
+                     TCTTCACATA TTCACCACAA CACAACGAGG AGCGCTCACA CACCACATAA
+                     ACTTCATATG TATGCCTCTA CACAGCGAGG TCCACTTACA TACAGCACCA
+
+                     ACAATATCAT GCCCCCTTTC ACCCGAGAAA ATACATTAAT AATCATACAC
+                     ACAACCTAAA CCCATCCTTT ACACGAGAAA ACACCCTTAT ATCCATACAC
+                     ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT GTTCATACAC
+                     ATAACATAAA GCCCTCATTC ACACGAGAAA ATACTCTCAT ATTTTTACAC
+                     CCAACATAAA ACCCTCATTT ACACGAGAAA ACATCCTCAT ATTCATGCAC
+                     ACAACATAAA ACCTTCTTTC ACACGCGAAA ATACCCTCAT GCTCATACAC
+                     AAAACATAAA ACCCTCACTC ACACGAGAAA ACATATTAAT ACTTATGCAC
+                     TCAACATAAA GCCCCCCTTC ACACGAGAAA ACACATTAAT ATTCATACAC
+                     TCAACATAAA ACCCCCCTTC ACACGAGAAA ACATATTAAT ATTCATACAC
+                     TCAATATAAA ACCCCCCTTC ACACGAGAAA ACATATTAAT ATTCATACAC
+                     TTAACATAAA ACCACCTTTC ACACGAGAAA ACATATTAAT ACTCATACAC
+                     GCAATATAAA ACCAATATTT ACACGAGAAA ATACGCTAAT ATTTATACAT
+
+                     CTATTTCCCT TAATCCTACT ATCTACCAAC CCCAAAGTAA TTATAGGAAC
+                     ATACTCCCCC TTCTCCTATT TACCTTAAAC CCCAAAATTA TTCTAGGACC
+                     CTATCCCCCA TTCTCCTCCT ATCCCTCAAC CCCGACATCA TTACCGGGTT
+                     CTATCCCCCA TCCTCCTTCT ATCCCTCAAT CCTGATATCA TCACTGGATT
+                     CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGATATTA TCACCGGGTT
+                     CTATCCCCCA TCCTCCTCTT ATCCCTCAAC CCCAGCATCA TCGCTGGGTT
+                     CTCTTCCCCC TCCTCCTCCT AACCCTCAAC CCTAACATCA TTACTGGCTT
+                     CTCGCTCCAA TTATCCTTCT ATCCCTCAAC CCCAACATCA TCCTGGGGTT
+                     CTCGCTCCAA TCATCCTCCT ATCTCTCAAC CCCAACATCA TCCTGGGGTT
+                     CTCGCTCCAA TTATCCTTCT ATCTCTCAAC CCCAACATCA TCCTGGGGTT
+                     CTCGCTCCAA TTATTCTTCT ATCTCTTAAC CCCAACATCA TTCTAGGATT
+                     ATAACACCAA TCCTCCTCCT TACCTTGAGC CCCAAGGTAA TTATAGGACC
+
+                     CATGTACTGT AAATATAGTT TAAACAAAAC ATTAGATTGT GAGTCTAATA
+                     CACGTACTGT AAATATAGTT TAAA-AAAAC ACTAGATTGT GAATCCAGAA
+                     TTCCTCTTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA
+                     CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA
+                     CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGATA
+                     CGCCTACTGT AAATATAGTT TAACCAAAAC ATTAGATTGT GAATCTAATA
+                     TACTCCCTGT AAACATAGTT TAATCAAAAC ATTAGATTGT GAATCTAACA
+                     TACCTCCTGT AGATATAGTT TAACTAAAAC ACTAGATTGT GAATCTAACC
+                     TACTTCCTGT AGATATAGTT TAACTAAAAC ATTAGATTGT GAATCTAACC
+                     TACCTCCTGT AAATATAGTT TAACTAAAAC ATTAGATTGT GAATCTAACT
+                     TACTTCCTGT AAATATAGTT TAATTAAAAC ATTAGACTGT GAATCTAACT
+                     CTCACCTTGT AATTATAGTT TAGCTAAAAC ATTAGATTGT GAATCTAATA
+
+                     ATAGAAGCCC AAAGATTTCT TATTTACCAA GAAAGTA-TG CAAGAACTGC
+                     ATAGAAGCTC AAAC-CTTCT TATTTACCGA GAAAGTAATG TATGAACTGC
+                     ACAGAGGCTT A-CGACCCCT TATTTACCGA GAAAGCT-CA CAAGAACTGC
+                     ACAGAGGCTC A-CGACCCCT TATTTACCGA GAAAGCT-TA TAAGAACTGC
+                     ACAGAGGCTC A-CAACCCCT TATTTACCGA GAAAGCT-CG TAAGAGCTGC
+                     ATAGGGCCCC A-CAACCCCT TATTTACCGA GAAAGCT-CA CAAGAACTGC
+                     ATAGAGGCTC G-AAACCTCT TGCTTACCGA GAAAGCC-CA CAAGAACTGC
+                     ATAGAGACTC A-CCACCTCT TATTTACCGA GAAAACT-CG CAAGGACTGC
+                     ATAGAGACTT A-CCACCTCT TATTTACCGA GAAAACT-CG CGAGGACTGC
+                     ATAGAGGCCT A-CCACTTCT TATTTACCGA GAAAACT-CG CAAGGACTGC
+                     ATAGAAGCTT A-CCACTTCT TATTTACCGA GAAAACT-TG CAAGGACCGC
+                     ATAGAAGAAT A-TAACTTCT TAATTACCGA GAAAGTG-CG CAAGAACTGC
+
+                     TAACTCATGC CTCCATATAT AACAATGTGG CTTTCTT-AC TTTTAAAGGA
+                     TAACTCTGCA CTCCGTATAT AAAAATACGG CTATCTCAAC TTTTAAAGGA
+                     TAACTCATGC CCCCATGTCT AACAACATGG CTTTCTCAAC TTTTAAAGGA
+                     TAATTCATAT CCCCATGCCT GACAACATGG CTTTCTCAAC TTTTAAAGGA
+                     TAACTCATAC CCCCGTGCTT GACAACATGG CTTTCTCAAC TTTTAAAGGA
+                     TAACTCTCAC T-CCATGTGT GACAACATGG CTTTCTCAGC TTTTAAAGGA
+                     TAACTCACTA TCCCATGTAT GACAACATGG CTTTCTCAAC TTTTAAAGGA
+                     TAACCCATGT ACCCGTACCT AAAATTACGG TTTTCTCAAC TTTTAAAGGA
+                     TAACCCATGT ATCCGTACCT AAAATTACGG TTTTCTCAAC TTTTAAAGGA
+                     TAATCCATGC CTCCGTACTT AAAACTACGG TTTCCTCAAC TTTTAAAGGA
+                     TAATCCACAC CTCCGTACTT AAAACTACGG TTTTCTCAAC TTTTAAAGGA
+                     TAATTCATGC TCCCAAGACT AACAACTTGG CTTCCTCAAC TTTTAAAGGA
+
+                     TAGAAGTAAT CCATCGGTCT TAGGAACCGA AAA-ATTGGT GCAACTCCAA
+                     TAGAAGTAAT CCATTGGCCT TAGGAGCCAA AAA-ATTGGT GCAACTCCAA
+                     TAACAGCTAT CCATTGGTCT TAGGCCCCAA AAATTTTGGT GCAACTCCAA
+                     TAACAGCCAT CCGTTGGTCT TAGGCCCCAA AAATTTTGGT GCAACTCCAA
+                     TAACAGCTAT CCATTGGTCT TAGGACCCAA AAATTTTGGT GCAACTCCAA
+                     TAACAGCTAT CCCTTGGTCT TAGGATCCAA AAATTTTGGT GCAACTCCAA
+                     TAACAGCTAT CCATTGGTCT TAGGACCCAA AAATTTTGGT GCAACTCCAA
+                     TAACAGCTAT CCATTGACCT TAGGAGTCAA AAACATTGGT GCAACTCCAA
+                     TAACAGCTAT CCATTGACCT TAGGAGTCAA AAATATTGGT GCAACTCCAA
+                     TAACAGCTAT CCATTGACCT TAGGAGTCAA AAACATTGGT GCAACTCCAA
+                     TAACAGCTAT CCATTGGCCT TAGGAGTCAA AAATATTGGT GCAACTCCAA
+                     TAGTAGTTAT CCATTGGTCT TAGGAGCCAA AAACATTGGT GCAACTCCAA
+
+                     ATAAAAGTAA TAAATTTATT TTCATCCTCC ATTTTACTAT CACTTACACT
+                     ATAAAAGTAA TAAATCTATT ATCCTCTTTC ACCCTTGTCA CACTGATTAT
+                     ATAAAAGTAA TAACCATGCA CACTACTATA ACCACCCTAA CCCTGACTTC
+                     ATAAAAGTAA TAACCATGTA TACTACCATA ACCACCTTAA CCCTAACTCC
+                     ATAAAAGTAA TAACTATGTA CGCTACCATA ACCACCTTAG CCCTAACTTC
+                     ATAAAAGTAA CAGCCATGTT TACCACCATA ACTGCCCTCA CCTTAACTTC
+                     ATAAAAGTAA TAGCAATGTA CACCACCATA GCCATTCTAA CGCTAACCTC
+                     ATAAAAGTAA TAATCATGCA CACCCCCATC ATTATAACAA CCCTTATCTC
+                     ATAAAAGTAA TAATCATGCA CACCCCTATC ATAATAACAA CCCTTATCTC
+                     ATAAAAGTAA TAATCATGCA CACCCCCATC ATAATAACAA CCCTCATCTC
+                     ATAAAAGTAA TAATCATGTA TACCCCCATC ATAATAACAA CTCTCATCTC
+                     ATAAAAGTAA TA---ATACA CTTCTCCATC ACTCTAATAA CACTAATTAG
+
+                     CTTAATTACC CCATTTATTA TTACAACAAC TAAAAAATAT GAAACACATG
+                     CCTAACTTTA CCTATCATTA TAAACGTTAC AAACATATAC AAAAACTACC
+                     CCTAATTCCC CCCATCCTTA CCACCCTCGT TAACCCTAAC AAAAAAAACT
+                     CTTAATTCTC CCCATCCTCA CCACCCTCAT TAACCCTAAC AAAAAAAACT
+                     CTTAATTCCC CCTATCCTTA CCACCTTCAT CAATCCTAAC AAAAAAAGCT
+                     CCTAATCCCC CCCATTACCG CTACCCTCAT TAACCCCAAC AAAAAAAACC
+                     CCTAATTCCC CCCATTACAG CCACCCTTAT TAACCCCAAT AAAAAGAACT
+                     CCTAACTCTC CCAATTTTTG CCACCCTCAT CAACCCTTAC AAAAAACGTC
+                     CCTAACTCTC CCAATTTTTG CCACCCTCAT CAACCCTTAC AAAAAACGTC
+                     CCTGACCCTT CCAATTTTTG CCACCCTCAC CAACCCCTAT AAAAAACGTT
+                     CCTAACTCTT CCAATTTTCG CTACCCTTAT CAACCCCAAC AAAAAACACC
+                     CCTACTAGCG CCAATCCTAG CTACCCTCAT TAACCCTAAC AAAAGCACAC
+
+                     CATACCCTTA CTACGTAAAA AACTCTATCG CCTGCGCATT TATAACAAGC
+                     CCTATGCACC ATACGTAAAA TCTTCTATTG CATGTGCCTT CATCACTAGC
+                     CATACCCCCA TTATGTAAAA TCCATTGTCG CATCCACCTT TATTATCAGT
+                     CATATCCCCA TTATGTGAAA TCCATTATCG CGTCCACCTT TATCATTAGC
+                     CATACCCCCA TTACGTAAAA TCTATCGTCG CATCCACCTT TATCATCAGC
+                     CATACCCCCA CTATGTAAAA ACGGCCATCG CATCCGCCTT TACTATCAGC
+                     TATACCCGCA CTACGTAAAA ATGACCATTG CCTCTACCTT TATAATCAGC
+                     CATACCCAGA TTACGTAAAA ACAACCGTAA TATATGCTTT CATCATCAGC
+                     CATACCCAGA TTACGTAAAA ACAACCGTAA TATATGCTTT CATCATCAGC
+                     CATACCCAGA CTACGTAAAA ACAACCGTAA TATATGCTTT TATTACCAGT
+                     TATATCCAAA CTACGTAAAA ACAGCCGTAA TATATGCTTT CATTACCAGC
+                     TATACCCGTA CTACGTAAAA CTAGCCATCA TCTACGCCCT CATTACCAGT
+
+                     CTAGTCCCAA TGCTCATATT TCTATACACA AATCAAGAAA TAATCATTTC
+                     CTCATCCCAA CTATATTATT TATCTCCTCA GGACAAGAAA CAATCATTTC
+                     CTCTTCCCCA CAACAATATT CATGTGCCTA GACCAAGAAG TTATTATCTC
+                     CTTTTCCCCA CAACAATATT CATATGCCTA GACCAAGAAG CTATTATCTC
+                     CTCTTCCCCA CAACAATATT TCTATGCCTA GACCAAGAAG CTATTATCTC
+                     CTTATCCCAA CAACAATATT TATCTGCCTA GGACAAGAAA CCATCGTCAC
+                     CTATTTCCCA CAATAATATT CATGTGCACA GACCAAGAAA CCATTATTTC
+                     CTCCCCTCAA CAACTTTATT CATCTTCTCA AACCAAGAAA CAACCATTTG
+                     CTCCCCTCAA CAACTTTATT CATCTTCTCA AACCAAGAAA CAACCATTTG
+                     CTCCCCTCAA CAACCCTATT CATCCTCTCA AACCAAGAAA CAACCATTTG
+                     CTCTCTTCAA CAACTTTATA TATATTCTTA AACCAAGAAA CAATCATCTG
+                     ACCTTATCTA TAATATTCTT TATCCTTACA GGCCAAGAAT CAATAATTTC
+
+                     CAACTGACAT TGAATAACGA TTCATACTAT CAAATTATGC CTAAGCTT
+                     CAACTGACAT TGAATAACAA TCCAAACCCT AAAACTATCT ATTAGCTT
+                     GAACTGACAC TGAGCCACAA CCCAAACAAC CCAGCTCTCC CTAAGCTT
+                     AAACTGGCAC TGAGCAACAA CCCAAACAAC CCAGCTCTCC CTAAGCTT
+                     AAGCTGACAC TGAGCAACAA CCCAAACAAT TCAACTCTCC CTAAGCTT
+                     AAACTGATGC TGAACAACCA CCCAGACACT ACAACTCTCA CTAAGCTT
+                     AAACTGACAC TGAACTGCAA CCCAAACGCT AGAACTCTCC CTAAGCTT
+                     GAGCTGACAT TGAATAATGA CCCAAACACT AGACCTAACG CTAAGCTT
+                     AAGCTGACAT TGAATAATAA CCCAAACACT AGACCTAACA CTAAGCTT
+                     GAGTTGACAT TGAATAACAA CCCAAACATT AGACCTAACA CTAAGCTT
+                     AAGCTGGCAC TGAATAATAA CCCAAACACT AAGCCTAACA TTAAGCTT
+                     AAACTGACAC TGAATAACTA TCCAAACCAT CAAACTATCC CTAAGCTT