Don't use the .data property, even in comments, since these get picke…

…d up by the doctests
biopython · Aug 28, 2010 · ea58c44 · ea58c44
1 parent d513a0d
commit ea58c44
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/Bio/AlignIO/ClustalIO.py b/Bio/AlignIO/ClustalIO.py
@@ -63,7 +63,7 @@ def write_alignment(self, alignment):
                 #identifier when output in the file by replacing
                 #them with underscores:
                 line = record.id[0:30].replace(" ","_").ljust(36)
-                line += record.seq.data[cur_char:(cur_char + show_num)]
+                line += record.seq[cur_char:(cur_char + show_num)].tostring()
                 output += line + "\n"
 
             # now we need to print out the star info, if we've got it

diff --git a/Bio/Seq.py b/Bio/Seq.py
@@ -120,7 +120,7 @@ def data(self) :
         >>> from Bio.Seq import Seq
         >>> from Bio.Alphabet import generic_dna
         >>> my_seq = Seq("ACGT", generic_dna)
-        >>> str(my_seq) == my_seq.tostring() == my_seq.data == "ACGT"
+        >>> str(my_seq) == my_seq.tostring() == "ACGT"
         True
         >>> my_seq.data = "AAAA"
         Traceback (most recent call last):