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Updating for recent deprecations
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peterc committed Aug 8, 2008
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Expand Up @@ -2,9 +2,18 @@ This file provides documentation for modules in Biopython that have been moved
or deprecated in favor of other modules. This provides some quick and easy
to find documentation about how to update your code to work again.

Bio.Blast.NCBIWWW
=================
The HTML BLAST parser was deprecated as of Release 1.48

Bio.Saf
=======
Deprecated as of Release 1.48, as it appears to have no users, and relies
on Martel which doesn't work properly with mxTextTools 3.0

Bio.IntelliGenetics
===================
Deprecated in favor of the "ig" format in Bio.SeqIO
Deprecated as of Release 1.48 in favor of the "ig" format in Bio.SeqIO

Bio.ECell
=========
Expand Down Expand Up @@ -54,7 +63,7 @@ Bio.FormatIO
============
This was removed in Release 1.44

Bio.expressions
Bio.expressions (and therefore Bio.config, Bio.dbdefs, Bio.formatdefs, Bio.dbdefs)
===============
This has been deprecated as of Release 1.44

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