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declare the trie and triefind modules obsolete #1658

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merged 1 commit into from Jun 4, 2018

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mdehoon
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@mdehoon mdehoon commented May 19, 2018

This pull request declares the Bio.trie and Bio.triefind modules obsolete. Please write a comment on this pull request if you would like to continue to use Bio.trie or Bio.triefind. Note that the pygtrie library provides an implementation of trie data structures.

I hereby agree to dual licence this and any previous contributions under both
the Biopython License Agreement AND the BSD 3-Clause License.

I have read the CONTRIBUTING.rst file and understand that AppVeyor and
TravisCI will be used to confirm the Biopython unit tests and flake8 style
checks pass with these changes.

I have added my name to the alphabetical contributors listings in the files
NEWS.rst and CONTRIB.rst as part of this pull request, am listed
already, or do not wish to be listed. (This acknowledgement is optional.)

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codecov bot commented May 19, 2018

Codecov Report

Merging #1658 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@          Coverage Diff           @@
##           master   #1658   +/-   ##
======================================
  Coverage    85.5%   85.5%           
======================================
  Files         327     327           
  Lines       49777   49777           
======================================
  Hits        42564   42564           
  Misses       7213    7213
Impacted Files Coverage Δ
Bio/triefind.py 97.82% <ø> (ø) ⬆️

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@peterjc
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peterjc commented May 21, 2018

Looks good to me - Let's see if anyone else comments via the mailing list:

http://mailman.open-bio.org/pipermail/biopython/2018-May/016443.html
http://mailman.open-bio.org/pipermail/biopython/2018-May/016444.html

@peterjc peterjc merged commit 0a5b475 into biopython:master Jun 4, 2018
@peterjc peterjc mentioned this pull request Jun 4, 2018
@mdehoon mdehoon deleted the trie_obsolete branch June 7, 2018 07:13
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2 participants