Dual license more of Bio.PDB

Bio/PDB/DSSP.py

@@ -1,7 +1,9 @@
 # Copyright (C) 2002, Thomas Hamelryck (thamelry@binf.ku.dk)
-# This code is part of the Biopython distribution and governed by its
-# license.  Please see the LICENSE file that should have been included
-# as part of this package.
+#
+# This file is part of the Biopython distribution and governed by your
+# choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
+# Please see the LICENSE file that should have been included as part of this
+# package.
 
 r"""Use the DSSP program to calculate secondary structure and accessibility.
 

Bio/PDB/Entity.py

@@ -1,8 +1,9 @@
 # Copyright (C) 2002, Thomas Hamelryck (thamelry@binf.ku.dk)
-# This code is part of the Biopython distribution and governed by its
-# license.  Please see the LICENSE file that should have been included
-# as part of this package.
-
+#
+# This file is part of the Biopython distribution and governed by your
+# choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
+# Please see the LICENSE file that should have been included as part of this
+# package.
 """Base class for Residue, Chain, Model and Structure classes.
 
 It is a simple container class, with list and dictionary like properties.

Bio/PDB/PDBList.py

@@ -1,10 +1,10 @@
 #!/usr/bin/env python
-
 # Copyright 2003, by Kristian Rother. All rights reserved.
-# This code is part of the Biopython distribution and governed by its
-# license.  Please see the LICENSE file that should have been included
-# as part of this package.
-
+#
+# This file is part of the Biopython distribution and governed by your
+# choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
+# Please see the LICENSE file that should have been included as part of this
+# package.
 #
 # PDBList.py
 #
@@ -29,9 +29,6 @@
 #   homepage : http://jaceksmietanski.net
 #   email    : jacek.smietanski@ii.uj.edu.pl
 #
-# This code is released under the conditions of the Biopython license.
-# Please see the LICENSE file that should have been included as part of this
-# package.
 # It may be distributed freely with respect to the original authors.
 # Any maintainer of the Biopython code may change this notice
 # when appropriate.

Bio/SVDSuperimposer/__init__.py

@@ -1,7 +1,9 @@
 # Copyright (C) 2002, Thomas Hamelryck (thamelry@vub.ac.be)
-# This code is part of the Biopython distribution and governed by its
-# license.  Please see the LICENSE file that should have been included
-# as part of this package.
+#
+# This file is part of the Biopython distribution and governed by your
+# choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
+# Please see the LICENSE file that should have been included as part of this
+# package.
 """Align on protein structure onto another using SVD alignment.
 
 SVDSuperimposer finds the best rotation and translation to put

CONTRIB.rst

@@ -157,6 +157,7 @@ please open an issue on GitHub or mention it on the mailing list.
 - Kevin Wu <https://github.com/kevinwuhoo>
 - Kian Ho <https://github.com/kianho>
 - Kiran Mukhyala <https://github.com/mukhyala>
+- Klaus Kopec <https://github.com/klauskopec>
 - Konrad Förstner <https://github.com/konrad>
 - Konstantin Okonechnikov <k.okonechnikov at domain gmail.com>
 - Konstantin Vdovkin <https://github.com/rtf_const>

Tests/test_PDB.py

@@ -5,9 +5,10 @@
 # Converted by Eric Talevich from an older unit test copyright 2002
 # by Thomas Hamelryck.
 #
-# This code is part of the Biopython distribution and governed by its
-# license. Please see the LICENSE file that should have been included
-# as part of this package.
+# This file is part of the Biopython distribution and governed by your
+# choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
+# Please see the LICENSE file that should have been included as part of this
+# package.
 
 """Unit tests for the Bio.PDB module."""
 from __future__ import print_function