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Improve logging and handling of PDB writing errors. #4753

Merged
merged 6 commits into from
Jun 26, 2024
Merged

Improve logging and handling of PDB writing errors. #4753

merged 6 commits into from
Jun 26, 2024

Commits on Jun 21, 2024

  1. Improve logging and handling of PDB writing errors.

    @JoaoRodrigues
    JoaoRodrigues committed Jun 21, 2024
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  2. Restore full traceback to help debug.

    @JoaoRodrigues
    JoaoRodrigues committed Jun 21, 2024
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  3. Fix test removals

    @JoaoRodrigues
    JoaoRodrigues committed Jun 21, 2024
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Commits on Jun 22, 2024

  1. Generalize reversion mechanism.

    @JoaoRodrigues
    JoaoRodrigues committed Jun 22, 2024
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Commits on Jun 25, 2024

  1. Fix for 64bit Windows - RuntimeError buffer has unexpected item byte … 

    …size (8, expected 4) biopython#4751 (biopython#4752)

* update

* fix long dtype

* fix long dtype

* update

* update

* update

* update

* test numpy array repr

* test dtype

* try printing

* update

* update

* fix chapter_blast

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

---------

Co-authored-by: Michiel de Hoon <mdehoon@tkx249.genome.gsc.riken.jp>
Co-authored-by: Michiel de Hoon <mdehoon@madpc2s-MacBook-Pro.local>
    @mdehoon @JoaoRodrigues
    3 people authored and JoaoRodrigues committed Jun 25, 2024
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  2. Add rid and rtoe attributes (biopython#4756)

    @mdehoon @JoaoRodrigues
    mdehoon authored and JoaoRodrigues committed Jun 25, 2024
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