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Updated README
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phantomas1234 committed Aug 14, 2014
1 parent a8707a6 commit cdd0f67
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11 changes: 1 addition & 10 deletions README.md
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[![Gitter chat](https://badges.gitter.im/biosustain/cameo.png)](https://gitter.im/biosustain/cameo)

### Vision
Provide a high-level python library to aid the strain design efforts of the CFB iLoop design group. The library provides a modular architecture that enables the efficient construction of custom analysis workflows.

### Design

**No more copying** making copies of models is expensive, stick to the [_command pattern_](http://en.wikipedia.org/wiki/Command_pattern) using TimeMachine (util.py)
**Database**: no more flatfiles ...
**Caching**: optimization results are cached
**Parallelization**: parallelize algorithms
**Long-running jobs**: hide paralellization
**Wrap third party tools**: for example [fast-tFVA](http://bioinformatics.oxfordjournals.org/content/29/7/903)
Provide a high-level python library to aid _in silico_ strain design process in metabolic engineering projects. The library provides a modular architecture that enables the efficient construction of custom analysis workflows.

### Dependencies
This library dependes on
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9 changes: 8 additions & 1 deletion setup.py
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'git+https://github.com/biosustain/ipython_notebook_utils.git@master#egg=ipython_notebook_utils'
]

# from https://coderwall.com/p/qawuyq
try:
import pypandoc

description = pypandoc.convert('README.md', 'rst')
except (IOError, ImportError):
description = ''

setup(
name='cameo',
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license='Apache License Version 2.0',
keywords='biology metabolism bioinformatics',
url='TBD',
long_description=open('README.md').read(),
long_description=description,
classifiers=[
'Development Status :: 3 - Alpha',
'Topic :: Utilities',
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