TOPIC: Python
If the user is interested in natively installing python on their computer, please see https://www.python.org/downloads/
Otherwise, see: Introduction to using Jupiter notebooks via MyBinder.org
- Lesson 1: Introduction to Python
- Lesson 2: Immutable Data types
- Lesson 3: Mutable Data types
- Lesson 4: Live Coding Demo 1
- Lesson 5: Live Coding Demo 2
- Lesson 6: Live Coding Demo 3
- Lesson 7: Introduction to Pandas dataframes
- Lesson 8: Pandas dataframes II
- Lesson 9: Ordinations Part I - Jaccard and Bray-Curtis beta-diversity
Date posted: 14 April 2020
Author(s): Ashley B. Cohen
Instructor(s): Ashley B. Cohen
- Exploring the features of Binder
- Running a simple script
- Typing python commands in a terminal environment
Date posted: 14 April 2020
Author(s): Ashley B. Cohen
Instructor(s): Ashley B. Cohen
Content | Video presentation |
Date posted: 30 April 2020
Author(s): Dr. Ben Tully
Instructor(s): Dr. Ben Tully
- Set and determine the datatype of a variable using python methods
- Apply some of the built-in python string functions to manipulate the way that text is displayed in print statements
Date posted: 30 April 2020
Author(s): Dr. Ben Tully
Instructor(s): Dr. Ben Tully
Content |
Date posted: 12 May 2020
Author(s): Ashley Cohen
Instructor(s): Ashley Cohen
Content | Video Presentation |
Date posted: 12 May 2020
Author(s): Dr. Ben Tully
Instructor(s): Dr. Ben Tully
Content | Video Presentation |
Date posted: 14 May 2020
Author(s): Ashley Cohen
Instructor(s): Ashley Cohen
Content | Video Presentation |
Date posted: 23 May 2020
Author(s): Dr. Ben Tully
Instructor(s): Dr. Ben Tully
Content | Video Presentation |
Date posted: 6 June 2020
Author(s): Ashley Cohen
Instructor(s): Ashley Cohen
Content | Video Presentation |
Date posted: 22 June 2020
Author(s): Ashley Cohen
Instructor(s): Ashley Cohen
- A library developed for handling multi-dimensional data sets, which are stored as DataFrame python objects
Content | Video Presentation |
Date posted: 7 July 2020
Author(s): Ashley Cohen
Instructor(s): Ashley Cohen
- clean up the metadata table
- clean up the OTU table
- filter the OTU table
- Examine the abundances of OTUs in relationship to relevant categorical metadata
Content | Video Presentation |
Date posted: 3 August 2020
Author(s): Ashley Cohen
Instructor(s): Ashley Cohen
- Distance metrics - Jaccard & Bray-Curtis
- Ordination analysis
- Principle Coordinates Analysis
Content | Video Presentation |
Tools:
- https://biopython.org
- https://www.shogun-toolbox.org
- https://keras.io
- https://scikit-learn.org/stable/
Basic:
- https://www.pythonforbeginners.com/
- https://docs.python.org/3/tutorial/
- https://docs.scipy.org/doc/numpy/user/quickstart.html
- https://software-carpentry.org/lessons/
Advanced: