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Update instructions to run the workflow
Modernizes instructions to install Snakemake and run the workflow. Instead of manually installing the workflow's Conda environment and using the Snakemake in that environment to run the workflow, install a modern Snakemake and let Snakemake create the workflow environment on the fly. If the user has installed a modern Miniconda, the Conda solver will be using libmamba which is substantially faster than the old Conda solver that gets installed in the workflow's environment. Snakemake still tries to use mamba as the default Conda backend, so this commit updates all Snakemake commands to explicitly set the backend to "conda".
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name: flu_forecasting | ||
channels: | ||
- conda-forge | ||
- bioconda | ||
- defaults | ||
dependencies: | ||
|