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Pinned repositories

  1. nextstrain/augur

    Pipeline components for real-time virus analysis

    Python 25 10

  2. nextstrain/janus

    Build and deploy Nextstrain

    Python 4

  3. EichlerLab/pacbio_variant_caller

    SMRT-SV: Structural variant and indel caller for PacBio reads

    Python 22 9

  4. safe_projects

    Project management with git

    Shell 1

  5. workshop-wwu-2016

    Website and slides for bioinformatics workshop at WWU

    CSS

  6. bac_analysis

    BAC analysis pipeline(s)

    Python

886 contributions in the last year

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Contribution activity

September 2018

Created a pull request in nextstrain/augur that received 2 comments

Export amino acid translations JSON

This PR adds a JSON output format for the augur translate command's --alignment-output option such that full amino acid translations can be exporte…

+16 −2 2 comments

Created an issue in nextstrain/augur that received 1 comment

augur export prefers num_date over numdate exported by augur refine

The augur refine command exports branch length information including a numdate field that provides a likely estimate for each node's date. The augu…

1 comment
13 contributions in private repositories Sep 4 – Sep 14

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