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Pinned

  1. Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

    Jupyter Notebook 1 1

  2. Interactive visualization of mutational antigenic profiling data

    JavaScript 6 4

  3. Pipeline components for real-time phylodynamic analysis

    Python 201 104

  4. Example Nextstrain workflow based on public SARS-CoV-2 sequences from GenBank

    Python 1

  5. nextstrain/ncov Public template

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.3k 382

  6. Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    Python 21 15

1,640 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Mon Wed Fri
Activity overview
Contributed to nextstrain/ncov, nextstrain/augur, blab/ncov-omicron and 45 other repositories

Contribution activity

May 2022

Created a pull request in bioconda/bioconda-recipes that received 4 comments

Update Auspice to version 2.37.1

Bump to most recent Auspice version and update maintainers. Please read the guidelines for Bioconda recipes before opening a pull request (PR). I…

+6 −3 4 comments
Opened 2 other pull requests in 2 repositories
nextstrain/ncov-tutorial 1 merged
nextstrain/ncov 1 merged

Created an issue in nextstrain/ncov-ingest that received 2 comments

Allow ncov-ingest to download from non-AWS remote file paths

Context To support running ingest on Terra, we need to support downloading existing Nextclade alignments and metadata from remote storage other tha…

2 comments
Opened 1 other issue in 1 repository

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