You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
Repository navigation
Commit ffc855f
Browse filesBrowse the repository at this point in the historyBrowse files
Copy file name to clipboardExpand all lines: README.md
+8-5Lines changed: 8 additions & 5 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -15,7 +15,7 @@
15
15
# Figures
16
16
### Main:
17
17
18
-

18
+

19
19
**Typed maximum clade credibility tree of MERS-CoV genomes from humans and camels.**
20
20
21
21
Maximum clade credibility (MCC) tree showing inferred ancestral hosts for MERS-CoV recovered with the structured coalescent.
@@ -27,7 +27,7 @@ Whilst large clusters of human cases are apparent in the tree, significant contr
27
27
28
28
------------------------------
29
29
30
-

30
+

31
31
**MERS-CoV seasonality.**
32
32
33
33
A) Violin plots coloured by month showing the 95% highest posterior density interval for odds ratios of MERS-CoV introductions into human populations.
@@ -40,7 +40,7 @@ The black dotted line indicates the joint probability density for introductions.
40
40
41
41
------------------------------
42
42
43
-

43
+

44
44
**Results of Monte Carlo simulations.**
45
45
46
46
Each row corresponds to a different bias value used to concentrate the hypergeometric distribution that simulates sequencing, and goes from 1 (no bias) to 2, and 3 (increasing levels of bias).
@@ -54,7 +54,7 @@ Monte Carlo simulations indicate R0 for MERS-CoV is likely to be below 1.0, with
54
54
55
55
------------------------------
56
56
57
-

57
+

58
58
A) Heatmap shows the posterior probability that a pair of tips from trees of genomic fragments fall within the same clade - tips from fragment 1 are on the x axis, tips from fragment 2 are on the y axis.
59
59
Tips are ordered by their appearance in tree of genome fragment 2 (positions from nucleotide 21000 onwards) reduced to just the human tips and coloured by inferred host (blue for human, orange for camel) on the left.
60
60
Human clusters are largely well-supported as monophyletic and consistent across trees of both genomic fragments.
@@ -79,5 +79,8 @@ This is evidence for recombinant viruses generated in the reservoir entering hum
79
79
80
80
------------------------------
81
81
82
-
# License
82
+
###License
83
83
This work is licensed under a [Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)](https://creativecommons.org/licenses/by-sa/4.0/legalcode).
84
+
85
+
### Citation
86
+
[Dudas et al. 2018. MERS-CoV spillover at the camel-human interface. eLife 7: e31257.](https://doi.org/10.7554/eLife.31257)
0 commit comments