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README.md

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<sup>1</sup>Department of Epidemiology, University of Washington, Seattle, WA, USA, <sup>2</sup>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA
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* [protocols](https://github.com/blab/mumps-seq/tree/master/protocols) for Illumina sequencing full genomes from buccal swabs
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* [bioinformatic pipeline](https://github.com/blab/mumps-seq/tree/master/pipelines) for generating consensus genome sequences from raw Illumina fastq files
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* [data](https://github.com/blab/mumps-seq/tree/master/data)
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* [Protocols](/protocols) for Illumina sequencing full genomes from buccal swabs
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* [Bioinformatic pipeline](/pipelines) for generating consensus genome sequences from raw Illumina fastq files
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* [Data](/data)
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### Citation
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[Moncla et al. 2021. Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State. eLife 10: e66448.](https://doi.org/10.7554/eLife.66448)

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