Fix links

blab · Dec 19, 2017 · a8cd134 · a8cd134
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diff --git a/HIV/README.md b/HIV/README.md
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 There are four broad categories of analyses that we did on HIV sequences for this paper.
 
-1. [Maximum likelihood analysis for HIV-Env, HIV-Protease, and HIV-RT.](roka/HIV/max_likelihood)
-2. [Derive an informed prior on the rate of evolution for temporally-resolved trees](/roka/HIV/clock_prior_controls)
-3. [Estimate a temporally-resolved phylogeny for HIV-Env](roka/HIV/bayesian_timetree)
-4. [Estimate changes in effective viral population size in Roka over the outbreak](roka/HIV/bayesian_skyline)
+1. [Maximum likelihood analysis for HIV-Env, HIV-Protease, and HIV-RT.](max_likelihood)
+2. [Derive an informed prior on the rate of evolution for temporally-resolved trees](clock_prior_controls)
+3. [Estimate a temporally-resolved phylogeny for HIV-Env](bayesian_timetree)
+4. [Estimate changes in effective viral population size in Roka over the outbreak](bayesian_skyline)