Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

probleam: julia preprocess.jl #29

Closed
jinhanlai opened this issue Jul 22, 2021 · 0 comments
Closed

probleam: julia preprocess.jl #29

jinhanlai opened this issue Jul 22, 2021 · 0 comments

Comments

@jinhanlai
Copy link

jinhanlai commented Jul 22, 2021

when i run:julia preprocess.jl:

HDF5-DIAG: Error detected in HDF5 (1.12.0) thread 0:
#000: H5F.c line 793 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#1: H5VLcallback.c line 3500 in H5VL_file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#2: H5VLcallback.c line 3465 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#3: H5VLnative_file.c line 100 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#4: H5Fint.c line 1707 in H5F_open(): unable to read superblock
major: File accessibility
minor: Read failed
#5: H5Fsuper.c line 621 in H5F__super_read(): truncated file: eof = 96, sblock->base_addr = 0, stored_eof = 2048
major: File accessibility
minor: File has been truncated
ERROR: LoadError: Error opening file /home/ccit19/ljh/t2vec/data/porto.h5
Stacktrace:
[1] error(::String, ::String)
@ Base ./error.jl:42
[2] h5f_open(pathname::String, flags::UInt16, fapl_id::HDF5.Properties)
@ HDF5 ~/.julia/packages/HDF5/VJkAi/src/api.jl:614
[3] h5open(filename::String, mode::String; swmr::Bool, pv::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HDF5 ~/.julia/packages/HDF5/VJkAi/src/HDF5.jl:436
[4] h5open(::var"#4#9"{SpatialRegion}, ::String, ::Vararg{String, N} where N; swmr::Bool, pv::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HDF5 ~/.julia/packages/HDF5/VJkAi/src/HDF5.jl:456
[5] h5open
@ ~/.julia/packages/HDF5/VJkAi/src/HDF5.jl:456 [inlined]
[6] makeVocab!(region::SpatialRegion, trjfile::String)
@ Main ~/ljh/t2vec/preprocessing/SpatialRegionTools.jl:185
[7] top-level scope
@ ~/ljh/t2vec/preprocessing/preprocess.jl:55
in expression starting at /home/ccit19/ljh/t2vec/preprocessing/preprocess.jl:50

why using h5open() error?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant