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[ERROR] Import submodule requires mygene and rpy2 tobe installed #29

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pmk2020 opened this issue Jan 28, 2021 · 0 comments
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[ERROR] Import submodule requires mygene and rpy2 tobe installed #29

pmk2020 opened this issue Jan 28, 2021 · 0 comments

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@pmk2020
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pmk2020 commented Jan 28, 2021 •
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Hi,
I am trying to create weights for all tissues using mashr models (GTEx v8) and got the following error.

===================================
FOCUS v0.6.10

focus import
mashr_Whole_Blood.db
predixcan
--tissue Whole_Blood
--name GTEx
--assay rnaseq
--output Whole_Blood_focus

Starting log...
[2021-01-28 15:22:17 - INFO] Preparing weight database
[2021-01-28 15:22:17 - ERROR] Import submodule requires mygene and rpy2 to be installed.
[2021-01-28 15:22:17 - ERROR] No module named 'mygene'
[2021-01-28 15:22:17 - INFO] Finished importing prediction models

Any help to solve this would be appreciated. Thank you!
@pmk2020 pmk2020 closed this as completed Jan 29, 2021
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@pmk2020