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How to evaluate result of a gene in 2 region. #32

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suehiro85 opened this issue Apr 29, 2021 · 0 comments
Closed

How to evaluate result of a gene in 2 region. #32

suehiro85 opened this issue Apr 29, 2021 · 0 comments

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@suehiro85
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Hi @quattro,

I performed FOCUS and get result. However, I found a gene in 2 region as below.

GENE CHR START END FUSION_pval cv.R2.pval twas_z PIP in_cred_set region
TRIT1 1 40303782 40349183 8.62E-02 0.065217 -0.406 0.000171 0 1:38732300-1:40199346
TRIT1 1 40303782 40349183 8.62E-02 0.065217 2.65 0.00479 0 1:40201007-1:41975226

The transcription site of TRIT1 is 40303782-40349183, which is in 1:40201007-1:41975226. Why the result of TRIT1 also exist in 1:38732300-1:40199346. Would you tell me?

Best Regards,
Hiroyuki

@quattro quattro closed this as completed Oct 31, 2022
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