[error] dataframe.pivot() takes 1 positional argument but 4 were given

[cthyshn]

hello, hope my message finds you well. i am trying to run focus finemap on one population, but i am getting this error and i do not know how to get around it:

this is what I have given as input:

i would really appreciate any advice, thank you so much!

[quattro]

Hi @cthyshn can you please report what version of pandas you are using?

[cthyshn]

hello @quattro, it is version 1.4.3!

[quattro]

Thanks. Can you run pip install -U pandas and then retry?

[xiechengyong123]

Hi, I'm getting a similar error on mine, my pandas version is 2.0.3.

[Xinyu-Sun]

Hello,

I also experienced the same error in FOCUS v0.802. I tried a few version of pandas, and noticed pandas 1.5.1 does not trigger the error, but it still throws a deprecated warning.

I also have numpy 1.23.1. I hope the information can be useful to others.

Thank you!

[quattro]

Thanks everyone. We'll look into updating the code to avoid deprecated func calls to pandas API

[quattro]

The latest version in github.com/mancusolab/ma-focus should fix this issue.