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escheR 1.3.1

SIGNIFICANT USER-VISIBLE CHANGES

  • Add functions add_fill_bin and add_ground_bin to provide hexgon binning strategy to mitigate the overplotting of data points
  • Provide an example to use add_fill_bin and add_ground_bin with make_escheR to create hexgon binning plot

escheR 1.2.0

SIGNIFICANT USER-VISIBLE CHANGES

  • Add generic functions to support SingleCellExperiment object by providing values to the argument dimred, and data.frame object
  • Modify the generic function make_escheR.SpatialExperiment to support SpatialExperiment that is beyond Visium
  • Update and add new vignette to show how to work with SingleCellExperiment to visualize dimred and color palette for bi-variate display.

escheR 1.1.1

SIGNIFICANT USER-VISIBLE CHANGES

  • The dependency on the package spatialLIBD are removed
  • Revise the README file to add explanations for Gestalt Principles to help users grasp the big picture idea without going to read the manuscript.

escheR 0.99.8

SIGNIFICANT USER-VISIBLE CHANGES

  • Add a new argument y_reverse = TRUE to make_escheR to provide a consistent orientation between spot plot and tissue image (see Issue #13)

escheR 0.99.7

SIGNIFICANT USER-VISIBLE CHANGES

  • Add default color scheme (viridis) to add_fill
  • Add explicit reference to spatialLIBD in make_escheR documentation
  • Add installation instruction for users whose R version is pre-R4.3

escheR 0.99.6

SIGNIFICANT USER-VISIBLE CHANGES

  • Add minimium versions to dependencies and imported packages
  • Import individual functions in NAMESPACE from packages
  • Clean up comments in code
  • Accepted by Bioconductor and will be released in Bioconductor 3.17

escheR 0.99.1

NEW FEATURES

  • Added a NEWS.md file to track changes to the package.
  • First full version of the package to be submitted to Bioconductor. See Bioconductor submission here.