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Seems like +00:00 is breaking the parsing of the time RG tag. Not sure if + is allowed here, I would assume it is.
+00:00
+
$ goleft indexcov --directory goleft_output/ my.bam panic: parsing time "2017-08-28T14:53:35.804417+00:00": extra text: +00:00: line 88: "@RG\tID:MY_SAMPLE\tSM:MY_SAMPLE\tLB:MY_SAMPLE\tPL:ILLUMINA\tPU:HNNKFAFXX-L004\tCN:GL\tDT:2017-08-28T14:53:35.804417+00:00" goroutine 1 [running]: github.com/brentp/goleft/indexcov.RefsFromBam(0x7fff82d67923, 0x38, 0x0, 0x0, 0x1, 0x0, 0xc42011ee10) /home/brentp/go/src/github.com/brentp/goleft/indexcov/indexcov.go:294 +0x509 github.com/brentp/goleft/indexcov.getReferences(0x7fff82d67914, 0xe, 0xc420120f01) /home/brentp/go/src/github.com/brentp/goleft/indexcov/indexcov.go:311 +0xb9 github.com/brentp/goleft/indexcov.Main() /home/brentp/go/src/github.com/brentp/goleft/indexcov/indexcov.go:340 +0x20e main.main() /home/brentp/go/src/github.com/brentp/goleft/cmd/goleft/goleft.go:68 +0x17f
The text was updated successfully, but these errors were encountered:
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Seems like
+00:00
is breaking the parsing of the time RG tag. Not sure if+
is allowed here, I would assume it is.The text was updated successfully, but these errors were encountered: