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scaling IBS
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@brentp brentp released this 11 Sep 16:20
· 33 commits to master since this release
v0.2.12
05e3b8c

v0.2.12

  • add checkbox to HTML to scale IBS0, IBS2, etc by number of sites shared by the samples. this almost always
    results in a scaling that is better across (pairs of) samples.
  • ancestry: allow globs for ancestry files (#59)

Installation

grab the static binary , or use docker via brentp/somalier:v0.2.12

sites files (unchanged from previous releases)

These sites files are build-specific, but as of this release, once the sites are extracted, the resulting somalier files can be used to compare samples even across genome builds.

sites.hg19.vcf.gz
sites.hg38.nochr.vcf.gz
sites.GRCh37.vcf.gz
sites.hg38.vcf.gz

sites.hg38.rna.vcf.gz only includes sites likely to be expressed in GTeX

Assets 3