Skip to content

Issues: brentp/somalier

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

52 Open 77 Closed
52 Open 77 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Inferring sex in 0.2.19
#140 opened Aug 13, 2024 by fellen31
4
(extremely minor) GRCh37 sites file has hg19 MT contig in header
#139 opened Jul 29, 2024 by davmlaw
Is there a way to rename samplename within .somalier files?
#138 opened Jul 16, 2024 by SpikyClip
2
Somalier with pooled parents
#136 opened May 24, 2024 by tetedange13
3
chrX sites count
#133 opened Mar 5, 2024 by AinaMontalban
[error] SIGSEGV: Illegal storage access. (Attempt to read from nil?) Segmentation fault (core dumped) (
#131 opened Dec 18, 2023 by egenomics
14
Inference questions
#129 opened Dec 1, 2023 by solcos
IBS1 count
#127 opened Nov 2, 2023 by rgve
Relatedness color pattern issue in plot
#126 opened Nov 2, 2023 by mirgin01
6
How sex is inferred
#124 opened Oct 2, 2023 by solcos
1
SIGSEGV: Illegal storage access. (Attempt to read from nil?)
#120 opened Aug 21, 2023 by pamelaxu213
2
Re-use of inferred parent names in large families
#119 opened Aug 9, 2023 by Awtum
1
No pedigree inference in samples from same family
#114 opened Jun 7, 2023 by mjlarsen
1
Relate Killed?
#113 opened Apr 30, 2023 by kevwilhelm95
4
convert somalier format to VCF/PED
#112 opened Apr 21, 2023 by adigenova
2
SIGSEGV: Illegal storage access. (Attempt to read from nil?) during Somalier relate
#109 opened Feb 3, 2023 by jlac
10
Clarification in relate command across genome builds
#108 opened Nov 9, 2022 by alexiswl
9
sites.vcf for chm13v2 (T2T) reference
#107 opened Nov 1, 2022 by kpalin
5
How're gt_depth_mean and depth_mean calculated?
#106 opened Sep 13, 2022 by SHuang-Broad
18
Inconsistent ancestry predictions between Somalier and Peddy
#103 opened Aug 17, 2022 by mpj5142
5
Matching Called VCF and Uncalled CRAMs
#100 opened Mar 18, 2022 by marcustutert
6
Filtering on nsites
#99 opened Mar 16, 2022 by marcustutert
5
Error extracting from a VCF
#98 opened Mar 14, 2022 by marcustutert
1
Error with find-sites
#96 opened Mar 3, 2022 by ashotmarg
15
Increasing Number of SNPs improving inference?
#95 opened Feb 25, 2022 by marcustutert
2
ProTip! Updated in the last three days: updated:>2024-10-30.