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Relion format update #50

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brisvag opened this issue Nov 26, 2020 · 4 comments
Closed

Relion format update #50

brisvag opened this issue Nov 26, 2020 · 4 comments

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@brisvag
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brisvag commented Nov 26, 2020

How do we deal with this? What additional info does it bring to us, if any?

@alisterburt
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not sure what you're referring to with this, do you mean the update of the convention in alisterburt/eulerangles?

@brisvag
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brisvag commented Nov 26, 2020

No, I'm referring to the fact that the new starfile format spits out multple dataframe. Or have I misunderstood?

@alisterburt
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ahhh gotcha!

Yes these are RELION 3.1+ STAR files with optics group information at the beginning.

We definitely need to be able to gracefully handle both cases, ideally without a user having to know about the existence of an alternative format from the one they have (i.e. let's try not to require a flag)

One additional piece of useful info is the pixel size is in the optics group information!! as well as the number of pixels in the box for each particle. We could use the pixel size info to move towards some rescaling functionality (#19)

@brisvag
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brisvag commented Dec 11, 2020

closed by #48 .

@brisvag brisvag closed this as completed Dec 11, 2020
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