Fix: AWS Batch with CWL: did not localize cwl.inputs.json [BA-4586] #5057
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Hi @Kirvolque - in talking to @myazinn it sounds like he's on the right track to the solution here. Closing this - feel free to reopen if you disagree. |
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The purpose of this PR is to fix issue #4586.
It turns out that Cromwell looks for the ad hoc files in the wrong location, while using AWS. These files placed in the S3 bucket, while Cromwell expects them to be in the root execution directory.
Therefore, we have changed the place where Cromwell searches that files. We also added an integration test that reproduces the problem.