Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Restore reshape R dependency and add test. #5022

Closed
samuelklee opened this issue Jul 17, 2018 · 1 comment · Fixed by #5040 or #5026
Closed

Restore reshape R dependency and add test. #5022

samuelklee opened this issue Jul 17, 2018 · 1 comment · Fixed by #5040 or #5026
Assignees

Comments

@samuelklee
Copy link
Contributor

See https://gatkforums.broadinstitute.org/gatk/discussion/12078/gatk-4-4-docker-image-missing-dependancies

Looks like I inadvertently removed this in the great purge of #3935. We should add a test to AnalyzeCovariates to cover plotting as well.

@samuelklee
Copy link
Contributor Author

Actually, is the reshape dependency even required for AnalyzeCovariates? If not, we should just remove the import statement from BQSR.R. In any case, we should still add a test to cover plotting.

@droazen can you delegate this?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment