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added logging output to the bam writing step #4501

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merged 1 commit into from Mar 8, 2018

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jamesemery
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There is currently an issue with spark stderr output if running through the wrapper script, this should make it a little clearer what spark is doing after it finishes with the tools work.

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@lbergelson lbergelson left a comment

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👍 merge when tests are green

@jamesemery
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added logging output to the bam writing step for spark tools (#4501)

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@jamesemery I still approve of these changes 👍

@jamesemery jamesemery merged commit 6d591a0 into master Mar 8, 2018
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2 participants