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GL-853 Modify VcfToAdpc to handle multiple samples. #1470

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merged 1 commit into from Feb 26, 2020

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@gbggrant gbggrant commented Feb 16, 2020

Description

Modify VcfToAdpc to handle multiple samples.

Put NaN in the adc.bin file if normalized intensity is null.
Output files containing number of samples and markers (useful for running VerifyIDIntensity itself).
Added tests

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  • Added or modified tests to cover changes and any new functionality
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@gbggrant gbggrant force-pushed the gg_GL-853_HaveVcfToAdpcHandleMultiSampleVcfs branch from 1101a79 to a229b85 Compare February 24, 2020 14:44
@gbggrant gbggrant changed the title GL-853 have vcf to adpc handle multi sample vcfs GL-853 Modify VcfToAdpc to handle multiple samples. Feb 24, 2020
@gbggrant gbggrant marked this pull request as ready for review February 24, 2020 14:48
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retest this please

Put NaN in the adc.bin file if normalized intensity is null.
Output files containing number of samples and markers (useful for running VerifyIDIntensity itself).
Added tests
@gbggrant gbggrant force-pushed the gg_GL-853_HaveVcfToAdpcHandleMultiSampleVcfs branch from f3fccea to 53834b3 Compare February 26, 2020 16:19
@gbggrant gbggrant merged commit 81bef8d into master Feb 26, 2020
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2 participants