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Remove hail shuffle #3717

Merged
merged 5 commits into from
Nov 8, 2023
Merged

Remove hail shuffle #3717

merged 5 commits into from
Nov 8, 2023

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hanars
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@hanars hanars commented Nov 8, 2023

Updates key_by behavior to keep datasets sorted by locus-allele instead of switching to the non-sorted variant_id

@hanars hanars requested a review from bpblanken November 8, 2023 19:37
'ENSG00000275023': {'total': 2, 'families': {'F000002_2': 2}},
'ENSG00000277258': {'total': 2, 'families': {'F000002_2': 2}},
'ENSG00000277972': {'total': 1, 'families': {'F000002_2': 1}},
'ENSG00000275023': {'total': 3, 'families': {'F000002_2': 3}},
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Behavior for gene counts changes for how it counts variants thats are included as part of multiple comp het pairs. While different than before, it is still accurate just with a different definition

@hanars hanars merged commit 108abe5 into dev Nov 8, 2023
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2 participants