Commits on Mar 29, 2019

1. Revamp of metagenomics rules …

   Add support for krakenuniq, kaiju to replace kraken and diamond in
   default pipelines.
   
   Both rely on customized krakenuniq/kaiju packages for custom
   functionality, like loading database
   from pipe or printing out all taxa hits (kaiju).
   
   Krona fixed to use hit counts as scores in report files directly,
   instead of counting the
   individual read classifications (which takes a long time).

   

   yesimon committed Mar 29, 2019
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