Add tooltip for annotation column

[leexgh]

Fix: cBioPortal/cbioportal#8305
Part of: cBioPortal/cbioportal#8711

Test: query any study and check mutations tab, patients view and mutation mapper tool
For example:
https://deploy-preview-3826--cbioportalfrontend.netlify.app/results/mutations?cancer_study_list=msk_impact_2017&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cfusion%2Ccna&case_set_id=msk_impact_2017_cnaseq&gene_list=BRAF&geneset_list=%20&tab_index=tab_visualize&Action=Submit

[leexgh]

We need to add this because we don't catch pending status for oncoKbData correctly. If oncoKbGeneExist is false then it directly goes to

else {
    value = {
        ...value,
        oncoKbStatus: 'complete',
        oncoKbIndicator: undefined,
    };
}

But at this moment oncoKbData could still be pending

[inodb]

Thanks for putting this together! Great work!

There are some more show/enable properties for each resource that would be good to handle

Try e.g.

localStorage.frontendConfig = '{"serverConfig":{"show_civic":false}}'

It will still show the civic icon in the header (prolly good to not show in the header if we've disabled the header at the app configuration level):

Similarly for other resources it would be good to not show them in the header if they are disabled (oncokb, hotspots, civic, mycancergenome)

TODO for testing:

• patient view
• mutation mapper tool

[zhx828]

In react-mutation-mapper, we have something similar to this. @onursumer I also realize there are good amount of content here can be shared between RMM and portal. What do you suggest in terms of how to resolve the dependency?

[onursumer]

We should probably get these from react-mutation-mapper if possible.

[onursumer]

Looks good. Just a few minor suggestions.

[onursumer]

should we extract this to a utility function? this is very similar to the one for copy-number-annotation

[leexgh]

@onursumer It could work but would it introduce some other code? Because we need to have clearInterval(this.oncokbInterval);, so for example if we move them to a util function, then we will have something like this:

this.oncokbInterval = setInterval(() => {
            someUtilFunction(this.setOncokbWidth, this.clearIntervalFn);
        }, 500);

and we will have to add this wherever that util function is called:

    @action.bound
    private clearIntervalFn() {
        clearInterval(this.oncokbInterval);
    }

    @action.bound
    private setOncokbWidth(width: number) {
        this.oncokbWidth = width;
    }

[onursumer]

Let's not worry about this then for now.

[onursumer]

We should probably get these from react-mutation-mapper if possible.

[onursumer]

Thanks!