Merge pull request #7140 from cBioPortal/config_service_geneset

Added `skin.show_gsva` to service_config
cBioPortal · Feb 11, 2020 · 71e9178 · 71e9178
2 parents 4f17933 + 832657d
commit 71e9178
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diff --git a/docs/portal.properties-Reference.md b/docs/portal.properties-Reference.md
@@ -16,6 +16,7 @@ This page describes the main properties within portal.properties.
 	- [Automatic hiding of putative passenger mutations](#automatic-hiding-of-putative-passenger-mutations)
 - [Gene sets used for gene querying](#gene-sets-used-for-gene-querying)
 - [Ehcache Settings](#ehcache-settings)
+- [Enable GSVA functionality](#enable-gsva-functionality)
 
 # Database Settings
 
@@ -354,4 +355,11 @@ For a list of counts of keys in cache per repository class:
 
 For more information on Ehcache, refer to the official documentation [here](https://www.ehcache.org/documentation/3.7/index.html)
 
-For more information on how Ehcache is implemented in cBioPortal refer to the [Caching](Caching.md) documentation.
+For more information on how Ehcache is implemented in cBioPortal refer to the [Caching](Caching.md) documentation.
+
+# Enable GSVA functionality
+
+[GSVA functionality](https://github.com/cBioPortal/cbioportal/blob/master/docs/File-Formats.md#gene-set-data) can be enabled by uncommenting this line (and making sure it is set to `true`): 
+```
+skin.show_gsva=true
+```
diff --git a/portal/src/main/webapp/config_service.jsp b/portal/src/main/webapp/config_service.jsp
@@ -107,8 +107,8 @@
             "oncoprint.custom_driver_annotation.tiers.default",
             "ensembl.transcript_url",
             "enable_persistent_cache",
-            "query_product_limit"  
-           
+            "query_product_limit",
+            "skin.show_gsva"
         }; 
     
    

diff --git a/src/main/resources/portal.properties.EXAMPLE b/src/main/resources/portal.properties.EXAMPLE
@@ -291,3 +291,6 @@ ehcache.cache_type=none
 # Limit the size of gene queries (number). gene count * sample count < query_product_limit
 # This limit is enforced on the frontend.
 # query_product_limit=1000000
+
+# Enable gsva to query
+# skin.show_gsva=true