docker compose breaks on macbook m1

[inodb]

Getting some osx thread issues and platform not supported on latest macbook m1. Had to create a docker-compose.override.yml like this:

version: '3'

services:
  cbioportal:
    image: cbioportal/cbioportal:5.2.4
  cbioportal-database:
    image: biarms/mysql:5.7
  cbioportal-session:
    image: cbioportal/session-service:0.6.0
  cbioportal-session-database:
    image: mongo:4.2

EDIT: Updated the above with pre-released versions of cbioportal and session service

[ndfriedman]

@inodb how should I add these changes? Replace the original "docker-compose.yml" with this file? Or add this file to the docker-compose file and point to it? Or replace the specific lines above inside the original "docker-compose.yml"?

[inodb]

@ndfriedman you add a file in the same folder called docker-compose.override.yml. This currently seems to work:

version: '3'

services:
  cbioportal:
    image: cbioportal/cbioportal:demo-support-multi-platform-images
  cbioportal-database:
    image: biarms/mysql:5.7
  cbioportal-session:
    image: cbioportal/session-service:master
  cbioportal-session-database:
    image: mongo:4.2

Note that this uses some dev and unofficial images (see e.g. biarms/mysql). I'm also not entirely sure how well session service works with mongo:4.2, we have been using mongo:3.7.9 previously but I didn't see an arm64 version of that

[inodb]

I fixed this in: cBioPortal/cbioportal-docker-compose@80bafc3